Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDFSKWTGQVALISGAGSELGIGFAIARRLAREGVRLLITASSERIRQRAEELSACGHDVRAASADLTDEAQVQGLLDWAEAQWGRVDILVNNAGMAQLDSAEPFSAVEATSLRDWQLSLSRNLTSAFLLTRGLLPGMRERGYGRIVNVASTTGTRGSNPGEAAYSAAKAGLVGWSMGLALEVAKSGITVNSVAPGWIATASSTA---EERQAALAS-PSGRAGRPEEVAAAVAFLASPEASFVNGELLVVDGGNCLIENKRS
3U09 Chain:B ((4-251))
MSQFMNLEGKVALVTGASR--GIGKAIAELLAERGAKVIGTATSESGAQAISDY--LGDNGKGMALNVTNPESIEAVLKAITDEFGGVDILVNNADITRDNLLMRMKEEE------WSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMG-NAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKALNDEQRTATLAQVPAGRLGDPREIASAVAFLASPEAAYITGETLHVNGGMYMI-----
General information:
TITO was launched using:
RESULT:
Template:
3U09.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112294 for 2075 contacts (-54.1/contact) +
2D Compatibility (PS) -27387 + (NN) -17581 + (LL) 896
1D Compatibility (HY) -17200 + (ID) 5400
Total energy: -178966.0 ( -86.25 by residue)
QMean score : 0.536
(partial model without unconserved sides chains):
PDB file :
Tito_3U09.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3U09-query.scw
PDB file :
Tito_Scwrl_3U09.pdb
: