Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRTLLLSALVAGALSCGYPTYEVQHDVSRVVGGQEASPNSWPWQVSLQYLS-SGKWHHTCGGSLVANNWVLTAAHCISN---SRTYRVLLGRHSLSTSESGSLAVQVSKLVVHEKWNAQKLSNGNDIALVKLASP----VALTSKIQTACLPPAGTILPNNYPCYVTGWGRLQTNG-ATPDVLQQGRLLVVDYATCSSASWWGSSVKTNMVCAGG-DGVTSSCNGDSGGPLNCQASNGQWQVHGIVSFGSTLGCNYPRKPSVFTRVSNYIDWINSVIAKN
3MHW Chain:U ((1-247))
------------------------------IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSAD-LAHHNDIALLKIRSKEGRCAQPSRTIQTISLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL-QGRMTLTGIVSWGR--GCALKDKPGVYTRVSHFLPWIRSHTKE-
General information:
TITO was launched using:
RESULT:
Template:
3MHW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -164046 for 2043 contacts (-80.3/contact) +
2D Compatibility (PS) -26061 + (NN) -15274 + (LL) 2652
1D Compatibility (HY) -18000 + (ID) 4100
Total energy: -224829.0 ( -110.05 by residue)
QMean score : 0.408
(partial model without unconserved sides chains):
PDB file :
Tito_3MHW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MHW-query.scw
PDB file :
Tito_Scwrl_3MHW.pdb
: