Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAFPAGFGWAAATAAYQVEGGWDADGKGPCVWDTFTHQ-GGERVFKNQTGDVACGSYTLWEEDLKCIKQLGLTHYRFSLSWSRLLPDGT-TGFINQKGIDYYNKIIDDLLKNGVTPIVTLYHFDLPQTLED-QGGWLSEAIIESFDKYAQFCFSTFGDRVKQWITINEANVLSVMSYDLGMFPPGIPHF-----------GTGGYQAAHNLIKAHARSWHSYDSLFRKKQKGMVSLSLFAVWLEPADPNSVSDQEAAKRAITFHLDLFAKPIFIDGDYPEVVKSQIASMSQKQGYPSSRLPEFTEEEKKMIKGTADFFAVQYYTTRLIKYQENKKG-ELGILQDAEIEFFP----DPSWK--NVDWIYVVPWGVCKLLKYIKDTYNNPVIYITENGFPQSDP------APLDDTQRWEYFRQTFQELFKAIQLDKVNLQVYCAWSLLDNFEWNQGYSSRFGLFHVDFEDPARPRVPYTSAKEYAKIIRNNGLEAHL |
| 3PTM Chain:A ((33-505)) | -SFPKGFIFGTASSSYQYEGGAAEGGRGPSIWDTFTHQHPE-KIADRSNGDVASDSYHLYKEDVRLMKDMGMDAYRFSISWTRILPNGSLRGGVNKEGIKYYNNLINELLSKGVQPFITLFHWDSPQALEDKYNGFLSPNIINDFKDYAEICFKEFGDRVKNWITFNEPWTFCSNGYATGLFAPGRCSPWEKGNCSVGDSGREPYTACHHQLLAHAETVRLYKAKYQALQKGKIGITLVSHWFVPFS-RSKSNNDAAKRAIDFMFGWFMDPLI-RGDYPLSMRGLVG----------NRLPQFTKEQSKLVKGAFDFIGLNYYTANYADNLPPSNGLNNSYTTDSRANLTGVRNGIPIGPQAASPWLYVYPQGFRDLLLYVKENYGNPTVYITENGVDEFNNKTLPLQEALKDDARIEYYHKHLLSLLSAIR-DGANVKGYFAWSLLDNFEWSNGYTVRFGINFVDYND-GRKRYPKNSAHWFKKFLLK------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PTM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -254797 for 4045 contacts (-63.0/contact) +
2D Compatibility (PS) -48132 + (NN) -20372 + (LL) 1012
1D Compatibility (HY) -38800 + (ID) 9400
Total energy: -370489.0 ( -91.59 by residue)
QMean score : 0.534
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