Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTALNVLIYPDDHLKVVCEPV--TKV-NDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIITIDVEGDKQ-------NQFVLINPEILASEGET-GIEEGCLSIPGFRALVPRKEKVTVRALDRDGKEFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIKYKKQIAKS
1Y6H Chain:A ((1-173))
-SVRKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVVGSEDNERYPGTPDVPERIILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTKLFGFNETLDSSH------
General information:
TITO was launched using:
RESULT:
Template:
1Y6H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90174 for 1228 contacts (-73.4/contact) +
2D Compatibility (PS) -17639 + (NN) -3117 + (LL) 776
1D Compatibility (HY) -14000 + (ID) 3050
Total energy: -127204.0 ( -103.59 by residue)
QMean score : 0.384
(partial model without unconserved sides chains):
PDB file :
Tito_1Y6H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y6H-query.scw
PDB file :
Tito_Scwrl_1Y6H.pdb
: