Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | M--ERDKPVSVSEFLLLGLSRQP---QQQHL--------LFVFFLSMYLATVLGNLLIILAISIDSRLHTPMYFFLSNMSFVDNCFSTTVPKMLANHILR-TQTISFSGCLMQMYFISELADMDNFLLAVMAYDRFVAVCRPLHYTAKMIHQLCALLVTGSWVVANSNALLHTLLMARLSFCADNTIPHIFCDVTPLLKLSCS-------DTHLSEVMILTEAALVTITPFLCLLASYMHITCVVLRVPSTKGRWKAFSTCGSHLAVVLLFYGTIMSPYFRTSSSHSAQR-------DIAAAVRFTVVTPVMNPLIYSLRNKDIKGALVKVVAVKFFSVQ------------- |
| 1F88 Chain:A ((1-348)) | MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTWVMALACAAPPLVGWSR-------YIPE-------GMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAASATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPSTTVSKTETSQVAPA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1F88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -215352 for 2405 contacts (-89.5/contact) +
2D Compatibility (PS) -29272 + (NN) 2362 + (LL) 836
1D Compatibility (HY) -17600 + (ID) 2800
Total energy: -261826.0 ( -108.87 by residue)
QMean score : 0.261
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