Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVPCSTVDMKAAACVGFATGK------DSKP-----------SQACCTGLQQLAQTVKTVDDKKAICRCLKASSKSL-----GI----K-DQFLSKIPAACNIKVGFPVSTNTNCETIH
1W2Q Chain:A ((23-114))
--------VNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEME----N--TQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAP-------------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32671 for 394 contacts (-82.9/contact) +
2D Compatibility (PS) -6617 + (NN) -2430 + (LL) 1496
1D Compatibility (HY) -2400 + (ID) 550
Total energy: -43172.0 ( -109.57 by residue)
QMean score : 0.380
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: