Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKSQLVKKVFDSV-AYRYDIMNDIISLGIHRLWKDKMVNSVHFTKNSQVLDVAGGTGDIAIRIVRREPSVQVTVCDINQNMLSRGRNKAINSNQL-NFNWVCANAESLPFEDSEFDCCTIAFGIRNVSDRKKALSEIHRVLKPNGQFICLEFAPMHYKNEIFTKLYDLYSLKVIPKIGNIVTKDESPYQYLVRSIREFPVQTDFKMEIEEVGFKKVKFHNMSYGIVALHTGTK
3DLC Chain:A ((5-204))
------NKKKFDKKGAKNMDEISKTLFAPIYPIIAENIINRFGI-TAGTCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGF--GNKE-LRDSI-SAEMIRKNPD-----------WKEFNRKNISQENVERFQNVLDEIGISSYEIILGDEGFWIIISKTD
General information:
TITO was launched using:
RESULT:
Template:
3DLC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109431 for 1573 contacts (-69.6/contact) +
2D Compatibility (PS) -21076 + (NN) -4851 + (LL) 1204
1D Compatibility (HY) -6400 + (ID) 1700
Total energy: -142254.0 ( -90.43 by residue)
QMean score : 0.363
(partial model without unconserved sides chains):
PDB file :
Tito_3DLC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DLC-query.scw
PDB file :
Tito_Scwrl_3DLC.pdb
: