Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSDRFIKFNDEQLDAKQVMMLQDLARLLLKNEQTQVKIQKFPYYNPVQNVLITSWFWSHRPSHIEMAGLKTDVMLAAYGYHMMDVQIVNEVVQDKTFKHPKFYQQLFKLLEDMRVLNSIKVERPSTAKLIDLRLDTRVSYTESQIKVYRTKTQYTDLLFLYLEHAFLSQDFFDIPSIHSDLDDILVNMFLYLPNFFQNQNSEDNMYLAQRIMYQVDDILKEDMLNEYYYLPKTLYNTLASPEFDDLKRTDASQVDGQDDTSEDDDNESEKADSKSADSESKGGAYLEMELHEGQNSETLGNDEAREGDATDDMTDMMTKKGKGSNDTLNREEGDAVGQSQAFQLDGVNKNVEIKWQIPEIEPQYVLEYQESKQDVQYEIKDLIQIIKKTIEREQRDARFNLTKGRLQKDLINWFIDDQYKLFYKKQDLSKSFDATFTLLIDASASMHD-KMAETKKGVVLFHETLKAL--NIKHEILSFSEDAFDSDDHAQPNIINEIINYDYSTFEKDGPRIMALEP-----QDDNRDGVAIRVASERLMRR-----------NQHQRFLIVFSDGEPSAFNYSQDGIIDTYEA------VEMSRKFGIEVFNVFLSQ-DPITEDVEQTIHNIYGQ--YAIFVEGVAHLPGHLSPLLKKLLLKSL |
| 2ODP Chain:A ((7-228)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SGHLNLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKV---------LMSVLNDNSRDMTEVISSLENANYKDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGG----SPKTAVDHIREILNINQKRNDYLDIYAIGVGKLDV-DWRELNELGSKKDGERHAFILQDTKALHQVFEHMLD------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2ODP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -63384 for 1448 contacts (-43.8/contact) +
2D Compatibility (PS) -18795 + (NN) -2639 + (LL) 31516
1D Compatibility (HY) -6800 + (ID) 1100
Total energy: -61202.0 ( -42.27 by residue)
QMean score : 0.328
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