Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAFELPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGT-DLESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKGTVVEKIKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNNGQLEIVTTPNQDNPLT----EGKT--PILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNWEKVDELYNATK
3K9S Chain:B ((1-205))
-SYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITKLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKGDKLAVVSTANQDSPLMGEAISGASGFPIMGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAAARFAAKK
General information:
TITO was launched using:
RESULT:
Template:
3K9S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60129 for 1583 contacts (-38.0/contact) +
2D Compatibility (PS) -20373 + (NN) -834 + (LL) 208
1D Compatibility (HY) -19600 + (ID) 5450
Total energy: -106178.0 ( -67.07 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_3K9S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3K9S-query.scw
PDB file :
Tito_Scwrl_3K9S.pdb
: