Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLEKSFLKSKQLVLCGLGVLMLQACTCPNTSQRNSFLQDVPYWMLQNRSQYLTQGVDSSHIVDGKATEEIEKIATKRATIRVAQNIVHKLKEAYLSKSNRIKQKITNEMFIQMTKPIFDSLMNVDRLGIYINPNNEEVFALVRARSFDKDALSEGLHKM--SLDDQAVSILVSKVEEIFKDSINYGDVKVPIAM
2KIW Chain:A ((105-148))
------------------------------------------------------------------------------------------------------------------------------------------------QTIKKHDYQRFVDDISAQYSKNYVDSIVASTNMIFKYAYDTRLI------
General information:
TITO was launched using:
RESULT:
Template:
2KIW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13127 for 190 contacts (-69.1/contact) +
2D Compatibility (PS) -4475 + (NN) -3231 + (LL) 12352
1D Compatibility (HY) -3600 + (ID) 300
Total energy: -12381.0 ( -65.16 by residue)
QMean score : 0.641
(partial model without unconserved sides chains):
PDB file :
Tito_2KIW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KIW-query.scw
PDB file :
Tito_Scwrl_2KIW.pdb
: