Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRYIDDGLENQTILITGGAGFVGSNLAFYFQENHPKAKVVVLDKFRSNTLSSNNRPSSLGHFKNLIGFKGEVIIADINNPLDLRRLEKLHFDYLFHQAAVSDTTM--LNQELVMKTNYQAFLNLLEIARSKKA-KVIYASSAGVYGNTKAPNIVG--SNESPENVYGFSKLCMDEFVLSHS-S--DNVVGLRYFNVYGSREFYKEKTASMVLQLALSAMAF-KEVKLFEFGEQLRDFVYIEDVIQANVKAMKA-----QKSGVYNVGYSQARSYNEIVSILKEHLGDFKVSYIKNPYTF-FQKHTQAHIEPTILDLDYTPLYDLESGIKDYLPHIHAIFKEQHA |
| 3KO8 Chain:A ((1-310)) | ----------MRIVVTGGAGFIGSHLVDKLVEL--GYEVVVVDNLSSGR-------------REFVNPSAELHVRDLKDYSWG-AGI--KGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGDADVIPTPEEEPY-KPISVYGAAKAAGEVMCATYARLFGVRCLAVRYANVVGPRLRHG-----VIYDFIMKLRRNPNVLEVL----QRKSYLYVRDAVEATLAAWKKFEEMDAPFLALNVGNVDAVRVLDIAQIVAEVLG-LRPEIRLV----GDVKYMTLAVTKLMKLTGWRPTMTSAEAVKKTAEDLAKELW---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3KO8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -153873 for 2540 contacts (-60.6/contact) +
2D Compatibility (PS) -29924 + (NN) -9412 + (LL) 1768
1D Compatibility (HY) -14000 + (ID) 3300
Total energy: -208741.0 ( -82.18 by residue)
QMean score : 0.532
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