Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --MDLQQIDELENKFEEQEEQAQDTPLKQEPSTKEVKIPKKRGRKKSLLDEDKKKSFNIAFSPCVIKELNEFLLEFGSFKETRSTFIEEALIRHLKHRKNTQEQKLLKQLERLQNKEKGIMKTMNLNEFFTHKIIYKDTPLKFKDTLEQEISQASLVEKLILANILANMVFAKISNENAPKILISRLMCKFSPIDYESTIPSDFKPIDEEEYEDDLEWLNEEK-------EDRLFNYYLFLNGIKESDVEEV----FNESVEIYDECLIEIAQNVLKDKFSYDIDLLQVLVKGYAKEIREFLSYKPIKEIKDFKDKDTALYISLGKDYDKEKEPFSKKLQQCFKEILESKGI |
| 2RDB Chain:B ((8-329)) | ALKPLKTWSHLAGN-RRRPSEYEVVSTNLHYFTDNPERPWELDSNLPMQTWYKKYCFDSPLK----------HDDWNAFRDPDQLV-----YRTYNLLQDGQESYVQGLFDQLNDRGH----DQMLTREWVETLARFYTP------ARYLFHALQMGSVYIHQIAPASTITNCATYETADHLRWLTHTAYRTRELANCYPDVGFGKRERDVWENDPAWQGFRELIEKALIAWDWGEAFTAINLVTKPAVEEALLQQLGSLAQSEGDTLLGLLAQAQKRDAERHRRWSSALVKMALEK--EGNREVLQKWVAKWEPLADKAIEAYCSAL-PDGENAIVEAKSASRYVRQMMG- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2RDB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 63993 for 2423 contacts (26.4/contact) +
2D Compatibility (PS) -32644 + (NN) -16465 + (LL) 2824
1D Compatibility (HY) 6000 + (ID) 1800
Total energy: 21908.0 ( 9.04 by residue)
QMean score : 0.332
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