Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNRRERRKHKRRKNMIIVLSTVFLMFIATSWMIYEFKSKQEQTVSAPTKKKAATATNPSENAATNEPEETKDPEPVEEKPKETIVKNQEIDNYLQKIGFSGSA-LVVRDGETIIQKGYMYANRDDKVLNTPDTLFYIGSSQKAIIATALLQLEEKGKINTNDPISKYIPDF--PNGNKILVKNFMNHTSGIVGRPNLT-------------SNMTPDQIVKAIEK--RGIKSQPG-KWDYMDANYTVVGYLVEKISGQPLATYLQENIFNPAGMKHTGYYQKDVDGGKNVSTGYKID-ENGVFQSPKLADLTKLYGAGDISMSTTDMYLFDKALMDK--KLISEASLKKMFTKGS--------KSTYGMGFYVDP-----GSYNSHGVVTGWDVSNSFSHTGRTYVILFSNVQNYIASFGKVNNDIYGFLNK |
| 2QMI Chain:A ((3-332)) | ----------------------------------------------------------------------------------VGKLESFIVEKMAERKVPGISISIIKDGDVVYAKGFGYRNVEARLPSTPETIYGIGSITKSFTALAIMKLVEEGGLSLDDPVEKFVNIKLRPFGEPVTVHHLLTHSSGIPSLGYAEAFIDGMVGGDNWLPVSTPEETIAFARDMEKWAVAKPGERFFYLNTGYVLLGKIIEKVSGVSYEEYIKKKILEPLGMNRSYFFKEEVEKDKDVAMGYILDKEGRL---VPQPFPYGITADGGLLSSVLDLAKYLKMYIERDESIVSKEYIEKMETSYIKVPWEIFGGEGYGYGLIIYPNFLGEKLVGHSGSVGMYTGYIGYIPEKKIGVAVLENSSGY----------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2QMI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -97255 for 2506 contacts (-38.8/contact) +
2D Compatibility (PS) -32690 + (NN) -18609 + (LL) 7052
1D Compatibility (HY) -16800 + (ID) 3500
Total energy: -161802.0 ( -64.57 by residue)
QMean score : 0.476
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