Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VAKKSMIAKQKRTPKYAVQAYTRCERCGRPHSVIRKFKLCRICFRELAYKGQIPGVKKASW
4JI2 Chain:N ((2-61))
-ARKALIEKAKRTPKFKVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW
General information:
TITO was launched using:
RESULT:
Template:
4JI2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31567 for 327 contacts (-96.5/contact) +
2D Compatibility (PS) -6076 + (NN) -2291 + (LL) 192
1D Compatibility (HY) -7200 + (ID) 2100
Total energy: -49042.0 ( -149.98 by residue)
QMean score : ?
(partial model without unconserved sides chains):
PDB file :
Tito_4JI2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JI2-query.scw
PDB file :
Tito_Scwrl_4JI2.pdb
: