Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------------------------------------MIKTKFSDPLEQLAKKRKRKT----LFKTVVLALI-----TVLLVVGIAFKG---FTYLTSKNGQK--TYHNFELLSEIAYPNISYDSLYYQPSGQFT-------GKVHADRFKDI-DGVQIPYSSFEENYSISGTFGTNADEKSE-------KNGLYDRGTRQKVPQFF--NKNVKYKKGEAKTTPTNDLKYVNKLNNDLIEIAITFDKSYSYKEIKTMIPNNIKQNWLWIGTSTELDTSYWPTKYQFGTDPETLNTPQ-----IFIDKIKENLKGNSKVYFNNINIYSDLEKYAKKYDKVNNSDKLKFSGIILTGKAENFKQLKEKEWVHASSIGANI-EYKPYYKLDKE-------- |
| 1SQ9 Chain:A ((3-395)) | KVFIATANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKH-SFWALKWGASNSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHNNSNSIRSV-KFSPQGSLLAIAHDSN-SFGCI-TLYETEFGERIGSLSVPGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV-----KTKERITTLNMH-CDDIEIEEDILAVDEHGDSLAEPG------VFDVKFLKKG---WRSGMGADLNESLCCVCLDRSIRWFREAG |
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General information:
TITO was launched using:
| RESULT:
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Template: 1SQ9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 46365 for 2049 contacts (22.6/contact) +
2D Compatibility (PS) -31011 + (NN) -818 + (LL) 1932
1D Compatibility (HY) -12000 + (ID) 3150
Total energy: 1318.0 ( 0.64 by residue)
QMean score : 0.191
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