Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKNKKNNYDLMYFIPLVFLIYPIGGILYYHYPFWTLFFTLAFVGAYLYSVIIRGESKYHMIAWSTMLTYIFYMTIFINSGFIWYIYFLSNLLVYRFRDKLKSFRFISFACTLATVVFLCFFKASDFGDRIMFLIVPIFCIGYMWIAIENRNSEEQREKIAEQNQYINILSAENERNRIGRDLHDSLGHTFAMMTLKTELALKLLEKRNYDKVQKELSELNHISHQSMSEVRQIVSNLKYRTVVEEIDELYRLFQLSNIKLTVVNKLETSQLSPVTQSTITMILKELSNNIVKHAEADSVELSLVRQGATINIEMIDNGCGFTN-----------LDGDEFHSIQERLTIVEGTLTILSRSK-PTHIQVVLKEV |
1YSR Chain:A ((39-148)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IIVGLPAGLRLAVDNAIANAVKHGGATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFS---LGLALVAQQAQLHGGTASLENSPLGGARLVLRLPGP |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YSR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -40679 for 650 contacts (-62.6/contact) +
2D Compatibility (PS) -9535 + (NN) -3366 + (LL) 24280
1D Compatibility (HY) -2800 + (ID) 900
Total energy: -33000.0 ( -50.77 by residue)
QMean score : 0.504
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