Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANHRIDRVGMEIKREVNEILRLRVNDPRVQDVTITDVQMLGDLSMAKVFYTIHSTLASDNQKAQIGLEKATGTIKRELGKNLTMYKIPDLQFVKDESIEYGNKIDEMLRNLDKKD
2DYJ Chain:A ((4-94))
----GKAHLEAQLKRALAEEIQ-ALEDPRLFLLTVEAVRLSKDGSVLSVYVEAFR----EEEGALRALSRAERRLVAALARRVRMRRLPRLEFLPWRASP----------------
General information:
TITO was launched using:
RESULT:
Template:
2DYJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44381 for 652 contacts (-68.1/contact) +
2D Compatibility (PS) -9769 + (NN) -2567 + (LL) 1528
1D Compatibility (HY) -5600 + (ID) 950
Total energy: -61739.0 ( -94.69 by residue)
QMean score : 0.483
(partial model without unconserved sides chains):
PDB file :
Tito_2DYJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DYJ-query.scw
PDB file :
Tito_Scwrl_2DYJ.pdb
: