Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKKNKIKKTLVDQILDKAKIEHDSLQLDALQGDLPNGIQKQDIFKTLALIGDKTGPIIGILPLTEHLSEKKLAKISGNKKVQMIPQKDLQKITGYIHGANNPIGIRQKHNYPIFIDTIALEKQELIVSAGEIGRSIRINSEVLADFVNAKFADIKE
2J3L Chain:A ((274-354))
----------------------------------------PQRIIKSVLFIAD-EEPVMVLVRGDHDVNDVKLKNFLGADFLDEATEEDARRVLGAGFGSIGPVNV--SEDVKIYADLAVQDLANAIVGANEDGYHLTNVNPDRDFQPISYEDLRFV
General information:
TITO was launched using:
RESULT:
Template:
2J3L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23258 for 520 contacts (-44.7/contact) +
2D Compatibility (PS) -8923 + (NN) -3070 + (LL) 2892
1D Compatibility (HY) -4000 + (ID) 750
Total energy: -37109.0 ( -71.36 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_2J3L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J3L-query.scw
PDB file :
Tito_Scwrl_2J3L.pdb
: