Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------MNKSKKIENYQLLLLQAQALFSDETNALANLSNASAMLNAMLP----NSVFTGFYLFDGKE---LILGPFQGGVSCVHITLGKGVCGESAQTAKTLIVDDVTKHANYISCDSKAMSEIVVPMF-KNGKLLGVLDLDSSLVADYDEIDQEYLEKFVGILVEHTIWNLDMFGVEK
1F5M Chain:A ((4-179))
STGFHHADHVNYSSNLNKEEILEQLLLSYEGLSDGQVNWVCNLSNASSLIWHAYKSLAVDINWAGFYVTQASEENTLILGPFQGKVACQMIQFGKGVCGTAASTKETQIVPDVNKYPGHIACDGETKSEIVVPIISNDGKTLGVIDIDCLDYEGFDHVDKEFLEKLAKLINKSCVF---------
General information:
TITO was launched using:
RESULT:
Template:
1F5M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99184 for 1222 contacts (-81.2/contact) +
2D Compatibility (PS) -17215 + (NN) -7184 + (LL) 548
1D Compatibility (HY) -13200 + (ID) 3200
Total energy: -139435.0 ( -114.10 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_1F5M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1F5M-query.scw
PDB file :
Tito_Scwrl_1F5M.pdb
: