Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDIWTNLGRFAFIETEHVNLRPVAY-TDREAFWRIASKRTNLQFIF----PVQTSKKESDFLLVHSFMKEPLGVWAIEDKVSHKMFGVIRFENIDLSKKTAEIGY-FLKESSWGQGIMTECLKTLSFFAFQEFGMDKLIIVTHKENIASQKVALKAHFKQSRSFKGSDRYTRRIRDYIEFQLTRGDYRYE
3TCV Chain:A ((15-194))
---------RKIFEGRYVRLEPLNAQKHGDELFAASSVEDAEQRFTWLFETPPATRAEFEPWLDKASKSDDPLFFAVIDKASGKVAGRQALMRIDPANGVIEIGSIYWGPLISRRPAATEAQFLFMQYVFDVLGYRRYEWECHNENGPSRRAAERFGFRFEGIFRQHMVVKGRNRDTAWFSVLDSEWPAL
General information:
TITO was launched using:
RESULT:
Template:
3TCV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76694 for 1309 contacts (-58.6/contact) +
2D Compatibility (PS) -18572 + (NN) -6317 + (LL) 568
1D Compatibility (HY) 400 + (ID) 1700
Total energy: -102315.0 ( -78.16 by residue)
QMean score : 0.344
(partial model without unconserved sides chains):
PDB file :
Tito_3TCV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TCV-query.scw
PDB file :
Tito_Scwrl_3TCV.pdb
: