Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MALFFTFLKVSQVIFLVLLIAYASFLVISLVIGGVHLYEKNERKKSLTRNKEKIPISIIVPAYNES-TTIVSSIDSLLHLDYE--AYEIIVVDDGSSDNT-SDVLKEEFALMKISNTIDSIIATQTCKDVFQRQVGKVKLTLI-VKENGGKGDALNMGINAANYDYFLCLDADSMLQVDSLSQISKSIQVDPTVIAVGGLVQVAQGVKIEQGKVASYRLPWRIIPCAQALEYDSSF----LGARIFLDYLRANLIISGAFGLFKKDLVKAVGGYDTQTL---GEDMELVMKLHFFCRNNNIPYRICYETDAVCWSQAPTNLGDLRKQRRR |
| 2D7I Chain:A ((108-341)) | -------------------------------------------------LETLPNTSIIIPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMAL-------------------------FPSVRILRTKKREGLIRTRMLGASVATGDVITFLDSHCEANVNWLPPLLDRIARNR-KTIVCPMIDVIDHDDFRYETQA----GDAMRGAFDWEMYYKRIPIPPELQKADPSDPFESPVMAGGLFAVDRKWFWELGGYDPGLEIWGGEQYEISFKVWM------CGGRMEDIPCSRVGHIYRKYVPYKVPAGVS |
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General information:
TITO was launched using:
| RESULT:
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Template: 2D7I.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -138222 for 1760 contacts (-78.5/contact) +
2D Compatibility (PS) -23853 + (NN) -7301 + (LL) 7896
1D Compatibility (HY) -4800 + (ID) 2050
Total energy: -168330.0 ( -95.64 by residue)
QMean score : 0.348
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