Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQLNQRQERIIDIIKQFQPITGELIAEKLGVTRAALRSDLAVLSMLGIIDAKPKVGYFYLGQYHASIGTSHFEKMTVSEIMG--I-PLTVHQKDSVYDVIVHIFMEDAGCAFILDDDDFLCGVVSRKDLLKTSIGGG-----DLSKMPIGMVMTRMPHVTTVLENESLFAAADKLVSRKVDSLPVVRHDKQYPEKFKVIGKLSKTILASLFLEIRDY
3LQN Chain:A ((11-145))
----------------------------------------------------------------------EFQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEFERLEEMKVEQVMKQ--DIPVLKLEDSFAKALEMTIDHP--FICAVNEDG------YFEGILTRRAILKLLNKKV--
General information:
TITO was launched using:
RESULT:
Template:
3LQN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86667 for 927 contacts (-93.5/contact) +
2D Compatibility (PS) -13638 + (NN) -1752 + (LL) 6368
1D Compatibility (HY) -6800 + (ID) 1100
Total energy: -103589.0 ( -111.75 by residue)
QMean score : 0.443
(partial model without unconserved sides chains):
PDB file :
Tito_3LQN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LQN-query.scw
PDB file :
Tito_Scwrl_3LQN.pdb
: