Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------------------------------MATVKTNTDIFEQAWEGFKGVDWKEK---ASIARFVQANYAPYDGDESFLAGATERSLHIKKVIEETKAHYEETRF-----PMDTRV---------ASISEL--------PAGFIDKDSELIFGIQNDELFKLNFMPKGGIRMAETTLKE-----NGYEPDPAVHEIFTKYATTVNDGIF-RAYTSNIRRARHAHTVTGLPDAYSRGRIIGVYARLAVYGADYLMQEKVNDWNALNDIDEESIRLREEINLQYQALGEVVKLGDLYGVDVRKPAMNTKEAIQWVNIAFMAVC---RVINGAATSLGRVPIVLDIFAERDLARGTFTESEIQEFVDDFVLKLRTVKFARTKAYDALYSGDPTFITTSMAGMGADGRHRVTKMDYRFLNTLDNIGNSPEPNLTVLWSDQLPYAFRRYCMSMSHK---HSSIQYEGVSTMAKEGYGEMS--------------CISCCVSPLDPENEDKRHNLQYFGARVNVMKALLTGLNGGYDDVHKDYKVFDIDPIRDEVLNFDTVKANFEKSLDWLTDTYVDAMNIIHYMTDKYNYEAVQMAFLPSHVRANMGFGIC---------GFAN------TVDSLSAIKYA-------TVKPIRDED-----GYIYDYETVGDFPRYGEDDDRVDSIAEWLLEAFHGR-LAKHKLYKDAEATVSLLTITSNVAYSKQTGNSPVHKGVYLNE---DGSVNLSKVEFFSPGANPSNKAKGGWLQNLNSLSKLDFAHANDGISLTTQVSPRALGKTFDEQVDNLVTVLDGYFENGGQHVNLNVMDLKDVYDKIMNGE---DVIVRISGYCVNTKYLTPEQKTELTQRVFHEVLSMDDALTN--- |
| 4PKF Chain:A ((8-864)) | KVLEYKGKKLNFTPEDPAEETIPADELHEHLQKPSTARTKRLKERCRWKHASAGEFIEKSVTAGIERMRYLTEAHKASEGK--PEAIRRALGLANVLNKSTLVLQEDEFIVGYHAEDPNMFPLYPELSHMAVQDYLRSDYSPQPADEAAAINEYWKPHSLQSKCQPYFDPADLGRMYQVSSMEAPSFASGYNS------IVPPYETVLEDGLLARIKLAEKHIAEAQADMSTFP--WNGTKGLDNIAKIDNWKAMVIACKAVISW--ARRQGRLCKIVAENFETDPKRQAELLEIADICQRIPAEPCKGLKDAMQAKFFTFLICHAIERYASGYAQKEDTLLWPYYKASVVDKKFQPMSHMDAVELVEMERLKISEHGAGKSRAYREIFPGSNDLFILTVGGTNAKGEDACNDMTDAILEAAKRI-RTAEPSIVFRYSKKNREKTLRWVFECIRDGLGYPSIKHDEIGTEQMKEYAKFSLNGNGATDEEAHNWVNVLCMSPGIHGRRKTQKTRSEGGGSIFPAKLLEISLNDGYDWSYADMQLGPKTGDLSSLKSFEDVWEAFRKQYQYAINLCISTKDVSRYFEQRF----LQMPFVSAIDDGCMELGMDACALSEQPNGWHNPITTIVAANSLVAIKKLVFEEKKYTLEQLSQALKANWEGFEEMRVDFKRAPKWGNDDDYADGIITRFYEEIIGGEMRKITNYSGGPVMPTGQAVGLYMEVGSRTGPTP--DGRFGGEAADDGGI--------SPYMGTDKK---GPTAVLRSVSKVQ--KNQKGNLLNQRLSVPIMR--SKHGFEIWNSYIKTWHDLNIDHVQFNVVSTDEMRAAQREPEKHHDLIVRVSGYSARFVDIPTYGQNTIIARQEQDFSASDLEFLNVEI |
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General information:
TITO was launched using:
| RESULT:
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Template: 4PKF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -91003 for 6563 contacts (-13.9/contact) +
2D Compatibility (PS) -77619 + (NN) -16226 + (LL) 2152
1D Compatibility (HY) -18400 + (ID) 7350
Total energy: -208446.0 ( -31.76 by residue)
QMean score : 0.373
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