Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLVGKEIIEFSAQAYHDGKFITVTNEDVKGKWAVFCFYPADFSFVCPTELGDLQEQYETLKSLDVEVYSVSTDTHFVHKAWHDDSDVVGTITYPMIGDPSHLISQGFDVLGQD-GLAQRGTFIIDPDGVIQMMEINADGIGRDASTLIDKVRAAQYIRQHPGEVCPAKWKEGAETLTPSLDLVGKI
4MAB Chain:E ((1-186))
-SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGE----KWKEGEATLAPSLDLVGKI
General information:
TITO was launched using:
RESULT:
Template:
4MAB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94714 for 1330 contacts (-71.2/contact) +
2D Compatibility (PS) -19728 + (NN) -8938 + (LL) 460
1D Compatibility (HY) -20000 + (ID) 5400
Total energy: -148320.0 ( -111.52 by residue)
QMean score : 0.546
(partial model without unconserved sides chains):
PDB file :
Tito_4MAB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MAB-query.scw
PDB file :
Tito_Scwrl_4MAB.pdb
: