Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEESGNFGFDRLAELVKE--YKVDKFVVGLPKNMNNTS--GPRVEASQAYGDKITELFNL-PVEYQDERLTTVQAERMLVEQADISRGKRKKVIDKLAAQLILQNYLDRMF
1SZ2 Chain:A ((15-120))
-YALVGDVGGTNARLALCDIASGEISQAKTYSGLD--YPSLEAVIRVYLEEHKVEVKDGCIAIACPITGDWVAMTNHTWAFSIAE-MKKNLGFSHLEIINDFTAVSMAIPMLKKEHLIQFGGAEPVEGKPIAVYGAGTGLGVAH
General information:
TITO was launched using:
RESULT:
Template:
1SZ2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44763 for 690 contacts (-64.9/contact) +
2D Compatibility (PS) -10985 + (NN) -4221 + (LL) 348
1D Compatibility (HY) -2000 + (ID) 450
Total energy: -62071.0 ( -89.96 by residue)
QMean score : 0.481
(partial model without unconserved sides chains):
PDB file :
Tito_1SZ2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SZ2-query.scw
PDB file :
Tito_Scwrl_1SZ2.pdb
: