Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence------MNTLTVKDIKDRLQEVKDAQDPFIAQCENDPRKSVQTL------------VEQWLKKQAKEKALKEQWVNMTSYERLARNKGFRLIAGVDEVGRGPLAGPVVASAVILPEE----CEILGLTDSKKLSEKKREEYYELIMKEALAVGIGIVEATVIDEIN-----IYEASKMAMVKAIQDLSDT-----PDYLLVDAMTLPLDTAQ-------------ASIIKGDAKSVSIAAGACIAKVTRDRMMSAYAETYPMYGFEKNKGYGTKE-HLEALAAYGPTEL---HRKTFAPVQSFR------
2D0B Chain:A ((2-309))SNYVIQADQQLLDALRAHYEGALSDRLPAGALFAVKRPDVVITAYRSGKVLFQGKAAEQEAAKWISGASASNETADHQPSALAAHQLGSLSAIGSDEVGTGDYFGPIVVAAAYVDRPHIAKIAALGVKDSKQLNDEAIKRIAPAIMETV-PHAVTVLDNPQYNRWQRSGMPQTKMKALLHNRTLVKLVDAIAPAEPEAIIIDEFLKRDSYFRYLSDEDRIIRERVHCLPKAESVHVSVAAASIIARYVFLEEMEQLSRAVG-LLLPKGAGAIVDEAAARIIRARGEEMLETCAKLHFANTKKALAIAKRR


General information:
TITO was launched using:
RESULT:

Template: 2D0B.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1179 -104376 -88.53 -412.55
target 2D structure prediction score : 0.53
Monomeric hydrophicity matching model chain A : 0.67

3D Compatibility (PKB) : -88.53
2D Compatibility (Sec. Struct. Predict.) : 0.53
1D Compatibility (Hydrophobicity) : 0.67
QMean score : 0.424

(partial model without unconserved sides chains):
PDB file : Tito_2D0B.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2D0B-query.scw
PDB file : Tito_Scwrl_2D0B.pdb: