Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPCVFCAIIAGEAPAIRIYEDGGYLAILDIRPFTRGHTLVLPKRHTVDLTDTPPEALADMVAIGQRIARAARATKLADATHIAINDGRAAFQTVFHVHLHVLPPRNGDKLSVAKGMMLRRDPDREATGRILREALAQQDAAAQD
3P0T Chain:A ((5-133))
MASIFTKIINRELPGRFVYEDDDVVAFLTIEPMTQGHTLVVPREEIDNWQDVDSAAFNRVMGVSQLIGKAVCKAFRTERSGLII-----AGLEVPHLHVHVFPTRSLSDFGFAN---VDRNPSPES----LDEAQAKIKAA---
General information:
TITO was launched using:
RESULT:
Template:
3P0T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67233 for 957 contacts (-70.3/contact) +
2D Compatibility (PS) -14207 + (NN) -7242 + (LL) 532
1D Compatibility (HY) -10000 + (ID) 2200
Total energy: -100350.0 ( -104.86 by residue)
QMean score : 0.562
(partial model without unconserved sides chains):
PDB file :
Tito_3P0T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3P0T-query.scw
PDB file :
Tito_Scwrl_3P0T.pdb
: