Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSSPPKIRRYIPADRDATLAIWLEASRVGHGFLGEAELQKQKALVRDHY-LDASETWLALDGDTPLGFIGLLD-----------AFIGGLFVAPTAHGRGIGRQLVEHAATLK-----GALEVEVYAANREALGFYARCGFVESGRRPRDDEGRALEIVQLRREH
2DXQ Chain:A ((4-144))
--DAISLRAAGPGDLPGLLELYQVLNPSDPE-LTTQE---AGAVFAAMLAQPGLTIFVATENGKPVATATLLIVPNLTRAARPYAFIENVVTLEARRGRGYGRTVVRHAIETAFGANCYKVMLLTGRHDPAVHAFYESCGFVQNKTGFQIRQD------------
General information:
TITO was launched using:
RESULT:
Template:
2DXQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65677 for 825 contacts (-79.6/contact) +
2D Compatibility (PS) -13916 + (NN) -8648 + (LL) 1332
1D Compatibility (HY) -5600 + (ID) 1400
Total energy: -93909.0 ( -113.83 by residue)
QMean score : 0.340
(partial model without unconserved sides chains):
PDB file :
Tito_2DXQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DXQ-query.scw
PDB file :
Tito_Scwrl_2DXQ.pdb
: