Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVCAAFSGGAGASDAGALLEAARRGDTAQVASLLERKVEVDAPSADGSTPLLLATANDHLAVARQLIEAGADVNRQNSRLDSPYLLAGAEGRLEILRLTLLHGA----------DLKSTNRYGGTALIPACERGHVEVVKTLL-QAGVDPNHVNKLGWTGLLEAILLSDGGPRHQEIVRLLIDAGADVNLADADGVSPLAHARQRGQ-GGIERLLLAAGAQ
1WDY Chain:A ((69-239))
--------------------------------------------KKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV-EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL------
General information:
TITO was launched using:
RESULT:
Template:
1WDY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52606 for 1304 contacts (-40.3/contact) +
2D Compatibility (PS) -17913 + (NN) -13657 + (LL) 3764
1D Compatibility (HY) -10000 + (ID) 2850
Total energy: -93262.0 ( -71.52 by residue)
QMean score : 0.662
(partial model without unconserved sides chains):
PDB file :
Tito_1WDY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WDY-query.scw
PDB file :
Tito_Scwrl_1WDY.pdb
: