Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKHPGDFGADAQGAMNKALELFRKDMASNYKELGFQG
3VAU Chain:A ((1-151))
-GLSDGEWQQVLNVWGKVEADIAGHGQEVLIRLFTGHPETLEKFDKFKHLKTEAEMKASEDLKKHGTVVLTALGGILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISDAIIHVLHSKHPGDFGADAQGAMTKALELFRNDIAAKYKELGF--
General information:
TITO was launched using:
RESULT:
Template:
3VAU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68566 for 1126 contacts (-60.9/contact) +
2D Compatibility (PS) -16526 + (NN) -11311 + (LL) 156
1D Compatibility (HY) -17200 + (ID) 6650
Total energy: -120097.0 ( -106.66 by residue)
QMean score : 0.584
(partial model without unconserved sides chains):
PDB file :
Tito_3VAU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VAU-query.scw
PDB file :
Tito_Scwrl_3VAU.pdb
: