Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPNFSGNWKIIRSENFEEMLKALGVNMMMRKIAVAAASKPAVEIKQENDTFYIKTSTTVRTTEINFKIGEEFEEQTVDGRPCKSLVKWESGNKMVCEQRLLKGEGPKTSWSRELTNDGELILTMTADDVVCTRVYVRE
4M6S Chain:A ((1-137))
-PNFSGNWKIIRSENFEELLKVLGVNVMLRKIWVAAASKPAVEIKQEGDTFYIKVSTTVWTTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTKELTNDGELILTMTADDVVCTYVFVRE
General information:
TITO was launched using:
RESULT:
Template:
4M6S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30831 for 972 contacts (-31.7/contact) +
2D Compatibility (PS) -15144 + (NN) -3171 + (LL) 208
1D Compatibility (HY) -18400 + (ID) 6100
Total energy: -73438.0 ( -75.55 by residue)
QMean score : 0.441
(partial model without unconserved sides chains):
PDB file :
Tito_4M6S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M6S-query.scw
PDB file :
Tito_Scwrl_4M6S.pdb
: