Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLVLAVLLTVAAADSGISPRAVWQFRKMIKCVIPGSDPFLEYNNYGCYCGLGGSGTPVDELDKCCQTHDNCYDQAKKLDSCKFLLDNPYTHTYSYSCSGSAITCSSKNKECEAFICNCDRNAAICFSKAPYNKAHKNLDTKKYCQS
4BP2 Chain:A ((8-128))
----------------------ALWQFNGMIKCKIPSSEPLLDFNNYGCYCGLGGSGTPVDDLDRCCQTHDNCYKQAKKLDSCKVL------NNYSYSCSNNEITCSSENNACEAFICNCDRNAAICFSKVPYNKEHKNLDKK-----
General information:
TITO was launched using:
RESULT:
Template:
4BP2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66349 for 823 contacts (-80.6/contact) +
2D Compatibility (PS) -12200 + (NN) -6872 + (LL) 2544
1D Compatibility (HY) -15600 + (ID) 4500
Total energy: -102977.0 ( -125.12 by residue)
QMean score : 0.378
(partial model without unconserved sides chains):
PDB file :
Tito_4BP2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BP2-query.scw
PDB file :
Tito_Scwrl_4BP2.pdb
: