Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRHSKRTHCPDWDSRESWGHESYSGSHKRKRRSHSSTQENRHCKPHHQFKDSDCHYLEARCLNERDYRDRRYIDEYRNDYCEGYVPRHYHRDVESTYRIHCSKSSVRSRRSSPKRKRNRPCASHQSHSKSHRRKRSRSIEDDEEGHLICQSGDVLRARYEIVDTLGEGAFGKVVECIDHGMDGLHVAVKIVKNVGRYREAARSEIQVLEHLNSTDPNSVFRCVQMLEWFDHHGHVCIVFELLGLSTYDFIKENSFLPFQIDHIRQMAYQICQSINFLHHNKLTHTDLKPENILFVKSDYVVKYNSKMKRDERTLKNTDIKVVDFGSATYDDEHHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFQTHDSKEHLAMMERILGPIPAHMIQKTRKRKYFHHNQLDWDEHSSAGRYVRRRCKPLK-EFMLCHDEEHEKLFDLVRRMLEYDPARRITLDEALQHPFFDLLKRK |
4BGQ Chain:A ((10-302)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------VM-NKFEILGVVGEGAYGVVLKCRHK-ETHEIVAIKKFK----VKETTLRELKMLRTLKQ--E----NIVELKEAFRRRGKLYLVFEYVEKNMLELLEEMP-NGVPPEKVKSYIYQLIKAIHWCHKNDIVHRDIKPENLLISH-------------------NDVLKLCDFGFARNLSE-------TRWYRSPELLLGAPYGKSVDMWSVGCILGELSDGQPLFPGESEIDQLFTIQKVLGPLPSEQMKLFYSNPRFHG--LRFPAVNHP--------QSLERRYLGI---LNSVLLDLMKNLLKLDPADRYLTEQCLNHPTFQTQR-- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4BGQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -207117 for 2113 contacts (-98.0/contact) +
2D Compatibility (PS) -29325 + (NN) -7330 + (LL) 9260
1D Compatibility (HY) -25600 + (ID) 4150
Total energy: -264262.0 ( -125.06 by residue)
QMean score : 0.274
|
|
|