Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALKSLVVLPLLVLVLLLVRVQPSLGKESAAAKFERQHMDSGNSPSSSSNYCNLMMCCRKMTQGKCKPVNTFVHESLADVKAVCSQKKVTCKNGQTNCYQSKSTMRITDCRETGSSKYPNCAYKTTQVEKHIIVACGGKPSVPVHFDASV
9RSA Chain:B ((1-124))
--------------------------KETAAAKFERQHMDSSTSAASSSNYCNQMMKSRNLTKDRCKPVNTFVHESLADVQAVCSQKNVACKNGQTNCYQSYSTMSITDCRETGSSKYPNCAYKTTQANKHIIVACEGNPYVPVHFDASV
General information:
TITO was launched using:
RESULT:
Template:
9RSA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40917 for 902 contacts (-45.4/contact) +
2D Compatibility (PS) -13935 + (NN) -11392 + (LL) 3040
1D Compatibility (HY) -11600 + (ID) 5050
Total energy: -79854.0 ( -88.53 by residue)
QMean score : 0.379
(partial model without unconserved sides chains):
PDB file :
Tito_9RSA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-9RSA-query.scw
PDB file :
Tito_Scwrl_9RSA.pdb
: