Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLMVVLSLIAAAWAEEQNKLVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHC-KKPNLQVFLGKHNLRQRESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLERD--CSANTTSCHILGWGKTAD-GDFPDTIQCAYIHLVSREECEHA-YP---GQITQNMLCAGDEKYGKDSCQGDSGGPLVCGDHLRGLVSWGNIP-CGSKEKPGVYTNVC-RYTNWIQKTIQAK
1ORF Chain:A ((1-232))
---------------------IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHCNLNKRSQVILGAHSITREEPTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLRGGRDSCNGDSGSPLLCEGVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTIKG-
General information:
TITO was launched using:
RESULT:
Template:
1ORF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140580 for 1859 contacts (-75.6/contact) +
2D Compatibility (PS) -24028 + (NN) -11940 + (LL) 2740
1D Compatibility (HY) -15200 + (ID) 3950
Total energy: -192958.0 ( -103.80 by residue)
QMean score : 0.672
(partial model without unconserved sides chains):
PDB file :
Tito_1ORF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ORF-query.scw
PDB file :
Tito_Scwrl_1ORF.pdb
: