Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MASKPQPIAAANWKCNGSESLLVPLIETLNAATFDHDVQCVVAPTFLHIPMTKARLTNPKFQIAAQNAITRSGAFTGEVSLQILKDYGISWVVLGHSERRLYYGETNEIVAEKVAQACAAGFHVIVCVGETNEEREAGRTAAVVLTQLAAVAQKLSKEAWSRVVIAYEPVWAIGTGKVATPQQAQEVHELLRRWVRSKLGTDIAAQLRILYGGSVTAKNARTLYQMRDINGFLVGGASLKPEFVEIIEATK
2V2C Chain:A ((2-250))
--SKPQPIAAANWKCNGSQQSLSELIDLFNSTSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNAIAKSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGKVLTPQQAQEAHALIRSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVGGASLKPEFVDIIKATQ
General information:
TITO was launched using:
RESULT:
Template:
2V2C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -194496 for 2150 contacts (-90.5/contact) +
2D Compatibility (PS) -27154 + (NN) -10609 + (LL) 352
1D Compatibility (HY) -29200 + (ID) 9150
Total energy: -270257.0 ( -125.70 by residue)
QMean score : 0.836
(partial model without unconserved sides chains):
PDB file :
Tito_2V2C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2V2C-query.scw
PDB file :
Tito_Scwrl_2V2C.pdb
: