Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTGHHCWGYGQDDGPSNWHKLYPIAQGDRQSPINIISSQAVYSPSLQPLELF--YEACMSLSITNNGHSVQVDFNDSDDRTVVSGGPL--EGPYRLKQLHFHWGKKRDMGSEHTVDGKSFPSELHLVHWNAKKYSTFGEAAAAPDGLAVVGVFLETGDEHPSMNRLTDALYMVRFKDTKAQFSCFNPKCLLPTS--RHYWTYPGSLTTPPLSESVTWIVLREPIRISERQMEKFRSLLFTSEDDE-----RIHMVDNFRPPQPLKGRVVKASFQA
2W2J Chain:A ((29-291))
-----EWGYEE---GVEWGLVFPDANGEYQSPINLNSREARYDPSLLDVRLSPNYVVCRDCEVTNDGHTIQVILKS---KSVLSGGPLPQGHEFELYEVRFHWGRENQRGSEHTVNFKAFPMELHLIHWNSTLFGSIDEAVGKPHGIAIIALFVQIGKEHVGLKAVTEILQDIQYKGKSKTIPCFNPNTLLPDPLLRDYWVYEGSLTIPPCSEGVTWILFRYPLTISQLQIEEFRRLRTHVKGAELVEGCDGILGDNFRPTQPLSDRVIRAAFQ-
General information:
TITO was launched using:
RESULT:
Template:
2W2J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109125 for 2056 contacts (-53.1/contact) +
2D Compatibility (PS) -27047 + (NN) -13690 + (LL) -184
1D Compatibility (HY) -22800 + (ID) 5600
Total energy: -178446.0 ( -86.79 by residue)
QMean score : 0.451
(partial model without unconserved sides chains):
PDB file :
Tito_2W2J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2W2J-query.scw
PDB file :
Tito_Scwrl_2W2J.pdb
: