Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GSHMLEMRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
2AMT Chain:E ((1-156))
------MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIK---
General information:
TITO was launched using:
RESULT:
Template:
2AMT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117059 for 1312 contacts (-89.2/contact) +
2D Compatibility (PS) -17456 + (NN) -9989 + (LL) 592
1D Compatibility (HY) -21200 + (ID) 7800
Total energy: -172912.0 ( -131.79 by residue)
QMean score : 0.768
(partial model without unconserved sides chains):
PDB file :
Tito_2AMT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2AMT-query.scw
PDB file :
Tito_Scwrl_2AMT.pdb
: