Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLPTAQEVQGLMARYIELVDVGDIEAIVQMYADDATVEDPFGQPPIHGREQIAAFYRQGLGGGKVRACLTGPVRASHNGCGAMPFRVEMVWNGQPCALDVIDVMRFDEHGRIQTMQAYWSEVNLSVREPQ
1GS3 Chain:A ((2-127))
-NLPTAQEVQGLMARYIELVDVGDIEAIVQMFADDATVENPFGQPPIHGREQIAAFFRQGL---KVRACLTGPVRASHNGCGAMPFRVEMVWNGQPCALDVIDVMRFDEHGRIQTMQAFWSEVNLSV----
General information:
TITO was launched using:
RESULT:
Template:
1GS3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74977 for 896 contacts (-83.7/contact) +
2D Compatibility (PS) -13684 + (NN) -4510 + (LL) -124
1D Compatibility (HY) -18400 + (ID) 5950
Total energy: -117645.0 ( -131.30 by residue)
QMean score : 0.501
(partial model without unconserved sides chains):
PDB file :
Tito_1GS3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GS3-query.scw
PDB file :
Tito_Scwrl_1GS3.pdb
: