Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MPPSISAFQAAYIGIEVLIALVS---VPGNVLVIWAVKVNQALRDATFCFIVSLAVADVAVGALVIPL-AILINIGPQTY--FHTCLMVACPVLILTQSSILALLAIAVDRYLRVKIPLRYKMVVTPRRAAVAIAGCWILSFVVGLTP--MFGWNNLSAVERAWAANGSMGEPVIKCEFEKVISMEYMV---YFNFFVWVLPPLLLMVLIYLEVFYLIRKQLNKKVSASSGDPQK-YYGKELKIAKSLALILFLFALSWLPLHILNCITLFCPSCHKPSILTYIAIFLTHGNSAMNPIVYAFRIQKFRVTFLKIWNDHFRCQPAPPIDEDLPEERPDD |
2Y01 Chain:B ((13-298)) | -------------GMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVT-ASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDP-----QALKCYQDPGC-CDF--VTNRAYAIASSIISFYI----PLLIMIFVALRVYREAKEQIRKIDRASKRKTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDL-VPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLA---------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2Y01.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -242762 for 1958 contacts (-124.0/contact) +
2D Compatibility (PS) -28714 + (NN) -17579 + (LL) 3200
1D Compatibility (HY) -31200 + (ID) 5150
Total energy: -322205.0 ( -164.56 by residue)
QMean score : 0.305
|
|
|