Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAPSHRASQVGFCPTPERPLWRLPPTCRPRRMSVCYRPPGNETLLSWKTSRATGTAFLLLAALLGLPGNGFVVWSLAGWRPARGRPLAATLVLHLALADGAVLLLTPLFVAFLTRQ-AWPLGQAGCKAVYYVCALSMYASVLLTGLLSLQRCLAVTRPFLAPRLRSPALARRLLLAVWLAALLLAVPAAVYRHLWRDRVCQLCHP------SPVHAAAHLSLETLTAFVLPFGLMLGCYSVTLARLR--GARWGSGRHGARVGRLVSAIVLAFGLLWAPYHAVNLLQAVAALAPPEGALAKLGGAGQAARAGTTALAFFSSS-VNPVLYVFTAGDLLPRAGPRFLTRLFEGSGEARGGGRSREGTMELRTTPQLKVVGQGRGNGDPGGGMEKDGPEWDL |
| 1F88 Chain:A ((1-348)) | ------------MNGTEGPNFYVPFSNKTGVVRSPFEAP--QYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLR--TPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAASATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFT-----------HQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMM--------------------------------NKQFRNC-MVTTLCCGKNPSTTVSKTETSQVAPA- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1F88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -227381 for 2715 contacts (-83.7/contact) +
2D Compatibility (PS) -34403 + (NN) -20287 + (LL) 1728
1D Compatibility (HY) -20400 + (ID) 2750
Total energy: -303493.0 ( -111.78 by residue)
QMean score : 0.288
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