Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------------MLPSNITSTHPAVFLLVGIPGLEHLHAWISIPFCFAYTLALLGNCTLLFIIQADAALHEPMYLFLAMLATIDLVLSSTTLPKMLAIFWFRDQEINFFACLVQMFFLHSFSIMESAVLLAMAFDRYVAICKPLHYTTVLTGSLITKIGMAAVARAVTLMTPLPFLLRRFHYCRGPVIAHCYCEHMAVVRLACGDTSFNNIYGIAVAMFIVVLDLLFVILSYVFILQAVLQL-----------ASQEARYKAFGTCVSHIGAILSTYTPVVISSVMHRVAR-HAAPRVHILLAIFYLLFPPMVNPIIYGVKTKQIREYVLSLFQRKNM---------------- |
| 1F88 Chain:A ((1-348)) | MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLA---EPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSR--YIPEG-------------MQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAASATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPSTTVSKTETSQVAPA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1F88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -311078 for 2437 contacts (-127.6/contact) +
2D Compatibility (PS) -30469 + (NN) -10910 + (LL) 1464
1D Compatibility (HY) -17600 + (ID) 2500
Total energy: -371093.0 ( -152.27 by residue)
QMean score : 0.327
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