Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKETRGYGGDAPFCTRLNHSYTGMWAPERSAEARGNLTRPPGSGEDCGSVSVAFPITMLLTGFVGNALAMLLVSRSYRRRESKRKKSFLLCIGWLALTDLVGQLLTTPVVIVVYLSKQRWEHIDPSGRLCTFFGLTMTVFGLSSLFIASAMAVERALAIRAPHWYASHMKTRATRAVLLGVWLAVLAFALLPVLGVGQYTVQWPGTWCFISTGRGGNGTSSSHNWGNLFFASAFAFLGLLALTVTFSCNLATIKALVSRCRAKATASQSSAQWGRITTETAIQLMGIMCVLSVCWSPLLIMMLKMIFNQTSVEHCKTHTEKQKECNFFLIAVRLASLNQILDPWVYLLLRKILLRKFCQIRYHTNNYASSSTSLPCQCSSTLMWSDHLER |
| 2LNL Chain:A ((38-322)) | ----------------------------------------------NKYVVIIAYALVFLLSLLGNSLVMLVILYSRV-----GRSVTDVYLLNLALADLLFALT-LPIWAASK--VNGWIFGT---FLCKVVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLT-QKRHLVKFVCLGCWGLSMNLSLPFFLFRQAYHPNNSSPVCYEVLGNDT------AKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFKAHM-------------GQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQE-SCERRNNIGRALDATEILGFLHSCLNPIIYAFIGQNFRHGFLKILAMHG------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2LNL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -211790 for 2121 contacts (-99.9/contact) +
2D Compatibility (PS) -29005 + (NN) -7707 + (LL) 2788
1D Compatibility (HY) -20000 + (ID) 2800
Total energy: -268514.0 ( -126.60 by residue)
QMean score : 0.265
|
|
|