Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVSCGQVSSALSPCISYARGNGASPSAACCSGVRSLASSARSTADKQAACKCIKSAAAGLNAGKAAGIPTKCGVSIPYAISSSVDCSKIR
M039 Chain:A ((1-130))
AVSCGQVSSALSPCISYARGNGASPSAACCSGVRSLASSARSTADKQAACKCIKSAAAGLNAGKAAGIPTKCGVSIPYAISSSVDCSKIR
General information:
TITO was launched using:
RESULT:
Template:
M039.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47792 for 643 contacts (-74.3/contact) +
2D Compatibility (PS) -9459 + (NN) -2596 + (LL) 0
1D Compatibility (HY) -9600 + (ID) 4500
Total energy: -73947.0 ( -115.00 by residue)
QMean score : 0.509
(partial model without unconserved sides chains):
PDB file :
Tito_M039.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-M039-query.scw
PDB file :
Tito_Scwrl_M039.pdb
: