Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VVQCGQVTQLMAPCMPYLSGA--PGMTP---YGICCNSLGVLNQLAASTADRVAACNCVKAAASGG------FPA----VDFSRAAALPAACGLAINFAVTPNMDCNQVTDEP
1HSS Chain:A ((15-106))
--------PALPACRPLLRLQCNGSQVPEAVLRDCCQQLAHI--------SEWCRCGALYSMLDSMYKEHGAFPRCRREVVKLTAASITAVCRLPIVVD--------------
General information:
TITO was launched using:
RESULT:
Template:
1HSS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55487 for 437 contacts (-127.0/contact) +
2D Compatibility (PS) -6478 + (NN) 1376 + (LL) 1808
1D Compatibility (HY) -4800 + (ID) 850
Total energy: -64431.0 ( -147.44 by residue)
QMean score : 0.204
(partial model without unconserved sides chains):
PDB file :
Tito_1HSS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HSS-query.scw
PDB file :
Tito_Scwrl_1HSS.pdb
: