Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VCNMSNDEFMKCQ--PAAAATSNPTT-----------NPSAGCCSALSHA-----DLNCL--------------------CSYKNSPWLSIYNIDPNRAMQLPAKCGLTMPANC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
1XOC Chain:A ((17-520)) | KPQQGGDLVVGSIGEPTLFNSLYSTDDASTDIENMLYSFLTKTDEKLNVKLSLAESIKELDGGLAYDVKIKKGVKFHDGKELTADDVVFTYSVPLSKDYKGERGSTYEMLKSVEKKGDYEVLFKLKYKDGNFYNNALDSTAILPKHILGNVPIADLEENEFNRKKPIGSGPFKFKEWKQGQYIKLEANDDYFEGRPYLDTVTYKVIPDANAAEAQLQAGDINFFNVPATDYKTAEKFNNLKIVTDLALSYVYIGWNEKNELFKD--KKVRQALTTALDRESIVSQVLDGDGEVAYIPESPLSWNYPKDIDVPKFEYNEKKAKQMLAEAGWKDTNGDGILDKDGKKFSFTLKTNQGNKVREDIAVVVQEQLKKIGIEVKTQIVEWSALVEQMNPPNWDFDAMVMGWSLSTFPDQYDIFHSSQIKKGLNYVWYKNAEADKLMKDAKSISDRKQYSKEYEQIYQKIAEDQPYTFLYYPNNHMAMPENLEGYKYHPKRDLYNIEKWWLAK |
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General information:
TITO was launched using:
| RESULT:
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Template: 1XOC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -7664 for 280 contacts (-27.4/contact) +
2D Compatibility (PS) -7972 + (NN) -4241 + (LL) 112
1D Compatibility (HY) -1200 + (ID) 400
Total energy: -21365.0 ( -76.30 by residue)
QMean score : 0.351
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