Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------IDLCGMTQAELNECLPAVSKNNPTSPS-----------LLCCNALKHADYTCLC-GYKNSPWLGSFGVDPKLASS----LPKECDLTNAPTC--
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQME----EAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLMSQP-CQM
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22014 for 460 contacts (-47.9/contact) +
2D Compatibility (PS) -7320 + (NN) -5018 + (LL) 320
1D Compatibility (HY) -4000 + (ID) 1050
Total energy: -39082.0 ( -84.96 by residue)
QMean score : 0.354
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: