Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--GPAGCQDDVVALNE------ACYQYV---QKGAPTVPP-------SQECCDAVKSVDVPCVCSYLGSPGVRDNIS-----------MEKVFYVSQQCGVSIPGNCGGSMV
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMC-----PAIMMMLNEPMWIRMRDQVMSMAHNLPIECNL-MSQPCQM---
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30021 for 437 contacts (-68.7/contact) +
2D Compatibility (PS) -7797 + (NN) -4657 + (LL) 384
1D Compatibility (HY) -5600 + (ID) 850
Total energy: -48541.0 ( -111.08 by residue)
QMean score : 0.481
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: