Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------APAGTTCEQLESVARSCTGYLKR--SLIFLNDACCDGAESVYDALTTDAAVDLGFVCRCLRGFVISESLRPYLYRVANLPRLCRF--KDRGPIP-----YNNS----TIHDCRFSGTTRHSL--------------
1JMX Chain:A ((364-494))
KVEEVKVVPAFSIARIGEN-GASVPKVQGRFEAEAWGKDA--NGQPLRIGYLPASWKVE---------PFNERAVEDEDVKFAGKMQADGVFVPGGAGPNPERKMMTNNAGNLKVIATLADGGQTGEGHMIVTVQRWNNPPLP
General information:
TITO was launched using:
RESULT:
Template:
1JMX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7257 for 561 contacts (-12.9/contact) +
2D Compatibility (PS) -9916 + (NN) 643 + (LL) 1120
1D Compatibility (HY) 2800 + (ID) 1000
Total energy: -13610.0 ( -24.26 by residue)
QMean score : 0.023
(partial model without unconserved sides chains):
PDB file :
Tito_1JMX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JMX-query.scw
PDB file :
Tito_Scwrl_1JMX.pdb
: