Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LTCDDVNNNLISCLSYVAG---GG---KVP------------TSCCSGVKNLLSLAKTRNDRQTACSCLKSLAVEAN----NDQ-----LKRAQTVPKSCSLTIP--FPISRDVDCSKVK
1W2Q Chain:A ((22-121))
------RVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEME------NTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCDLDV--------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36110 for 405 contacts (-89.2/contact) +
2D Compatibility (PS) -7244 + (NN) -3177 + (LL) 1220
1D Compatibility (HY) -2400 + (ID) 650
Total energy: -48361.0 ( -119.41 by residue)
QMean score : 0.405
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: